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STEMNET
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STEMNET

STEMNET is a tool to cluster and classify cell populations in single-cell RNA-seq (scRNA-seq) data.



STEMNET

STEMNET is a tool to cluster and classify cell populations in single-cell RNA-seq (scRNA-seq) data.

Topic

RNA-seq

Details

  • Operation: RNA-Seq analysis; Prediction and recognition
  • Software interface: Command-line user interface
  • Language: R
  • License: GNU General Public License v3
    • Cost: Free
  • Version name: 0.1
  • Credit: Deutsche Forschungsgemeinschaft (DFG),Dietmar Hopp Foundation, US National Institutes of Health.
  • Contact: a.trumpp _at_ dkfz-heidelberg.de | m.essers _at_ dkfz-heidelberg.de | larsms _at_ embl.de
  • Collection: -

Publications

Velten L, Haas SF, Raffel S, Blaszkiewicz S, Islam S, Hennig BP, Hirche C, Lutz C, Buss EC, Nowak D, Boch T, Hofmann WK, Ho AD, Huber W, Trumpp A2, Essers MA, Steinmetz LM "Human haematopoietic stem cell lineage commitment is a continuous process." Nat Cell Biol. 2017 Apr;19(4):271-281. https://doi.org/10.1038/ncb3493
PMID: 28319093
PMCID: PMC5496982


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