A tool to quantify transcript expression in RNA-seq data. The Salmon algorithm can correct for GC-bias, and it uses 'selective-alignment' and massively-parallel stochastic collapsed variational inference to achieve high accuracy and speed. It reports transcripts per million mapped reads (TPM).
RNA-seq; Gene expression; Transcriptomics
Patro R, Duggal G, Love MI, Irizarry RA, Kingsford C "Salmon provides fast and bias-aware quantification of transcript expression." Nat Methods. 2017 Apr;14(4):417-419. https://doi.org/10.1038/nmeth.4197
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