TopHat-Fusion

TopHat-Fusion is a tool for the detection of gene fusion transcripts in RNA-seq data.

Topic

Transcriptomics; RNA-Seq; Gene transcripts; Mapping; Gene structure

Operation: Sequence comparison; Structural variation detection; Read mapping; RNA-Seq analysis
Software interface: Command-line user interface
Language: Python
Operating system: Linux
License: Boost Software License v1

Cost

Credit: This work was supported in part by NIH grants R01-LM006845 and R01-HG006102.
Contact: tophat.cufflinks _at_ gmail.com
Collection: -

Kim D, Salzberg SL "TopHat-Fusion: an algorithm for discovery of novel fusion transcripts." Genome Biol. 2011; 12(8):R72 https://doi.org/10.1186/gb-2011-12-8-r72
PMID: 21835007
PMCID: PMC3245612

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