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WebGestalt
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WebGestalt

WebGestalt is a web-based tool for the analysis of gene sets in various contects in single-cell RNA-seq (scRNA-seq) data.



WebGestalt

WebGestalt is a web-based tool for the analysis of gene sets in various contects in single-cell RNA-seq (scRNA-seq) data.

Topic

RNA-seq; Molecular interactions, pathways and networks; Model organisms; Mapping; Transcriptomics; Gene expression

Details

  • Operation: Gene set testing; Over-representation analysis; Data retrieval; Gene expression profile pathway mapping
  • Software interface: Web user interface
  • Language: PHP
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
    • Cost: Free
  • Version name: -
  • Credit: NIH/NCI, Leidos, CPRIT, NIH/NIAAA, NIH/NIDA, NIH/NIMH, NIH/NCI, NIH/NIGMS.
  • Contact: suhas.vasaikar _at_ bcm.edu | zhiao.shi _at_ bcm.edu | bing.zhang _at_ bcm.edu
  • Collection: -

Publications

Zhang B, Kirov S, Snoddy J "WebGestalt: an integrated system for exploring gene sets in various biological contexts." Nucleic Acids Res. 2005; 33(Web Server issue):W741-8 https://doi.org/10.1093/nar/gki475
PMID: 15980575
PMCID: PMC1160236


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