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dropbead
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dropbead

dropbead is a tool is for the analysis of single-cell RNA-seq (scRNA-seq) data from droplet sequencing.



dropbead

dropbead is a tool is for the analysis of single-cell RNA-seq (scRNA-seq) data from droplet sequencing.

Topic

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Details

  • Operation: -
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU General Public License v3
    • Cost: Free
  • Version name: 0.3.1
    • Maturity: Stable
  • Credit: Deutsche Forschungsgemeinschaft, the Berlin Institute of Health, the Deutsches Zentrum für Herz-Kreislaufforschung, the European Molecular Biology Organisation (EMBO), the Max Delbrück Center for Molecular Medicine in the Helmholtz Association (MDC).
  • Contact: christine.kocks _at_ mdc-berlin.de | rajewsky _at_ mdc-berlin.de | christine.kocks _at_ mdc-berlin.de
  • Collection: -

Publications

Grosswendt S, Wahle P, Ruffault PL, Ayoub S, Schreyer L, Boltengagen A, Birchmeier C, Zinzen R, Kocks C, Rajewsky N "Cell Fixation and Preservation for Droplet-Based Single-Cell Transcriptomics" BMC Biol. 2017 May 19;15(1):44. https://doi.org/10.1186/s12915-017-0383-5
PMID: 28526029
PMCID: PMC5438562


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