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Orione is a Galaxy-based framework that grouped together workflows and tools to perform de novo genome assembly, annotation, RNA-Seq and metagenomics analysis. This user-friendly tool is suitable for those working on microbes.


Sequence assembly


  • Operation: Genome assembly; Annotation; RNA-Seq; Metagenomics
  • Input: FASTQ
  • Output: -
  • Software interface: Web-based framework
  • Language: -
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: Sardinian Regional Authorities; Wellcome Trust
  • Contact: gianmauro.cuccuru _at_
  • Collection: -


Cuccuru G, Orsini M, Pinna A, Sbardellati A, Soranzo N, Travaglione A, Uva P, Zanetti G, Fotia G "Orione, a web-based framework for NGS analysis in microbiology." Bioinformatics. 2014 Jul 1;30(13):1928-9. Epub 2014 Mar 10.
PMID: 24618473
PMCID: PMC4071203

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