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QUAST-LG

QUAST-LG

QUAST-LG is a tool for genome assembly evaluation and is an extension of the software QUAST. While QUAST is suitable for smaller genomes (e.g. bacteria), QUAST-LG is meant for larger eukaryotic genomes (e.g. mammals). This tool implements new quality metrics such as k-mer based completeness and correctness, BUSCO completeness, and theoretical limits of assembly completeness and contiguity.

Topic

Sequence assembly

Details

Publications

Mikheenko A, Prjibelski A, Saveliev V, Antipov D, Gurevich A "Versatile genome assembly evaluation with QUAST-LG." Bioinformatics. 2018 Jul 1;34(13):i142-i150. https://doi.org/10.1093/bioinformatics/bty266
PMID: 29949969
PMCID: PMC6022658


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