SSPACE is a tool for scaffolding contigs using paired-end reads. It is modified from SSAKE assembler and has the feature of extending contigs using reads that are unmappable in the contig assembly step.
Sequence assembly
Boetzer M, Henkel CV, Jansen HJ, Butler D, Pirovano W "Scaffolding pre-assembled contigs using SSPACE." Bioinformatics. 2011 Feb 15;27(4):578-9. 2010 Dec 12. https://doi.org/10.1093/bioinformatics/btq683
PMID: 21149342
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