Velvet is a tool for de novo assembly based on de Bruijn graphs and it is suitable for short read data with high coverage. The algorithm implemented is capable of de Bruijn graphs manipulation to remove sequencing errors and resolve repeats.
Sequence assembly
Zerbino DR, Birney E "Velvet: algorithms for de novo short read assembly using de Bruijn graphs." Genome Res. 2008 May;18(5):821-9. https://doi.org/10.1101/gr.074492.107
PMID: 18349386
PMCID: PMC2336801
If you find errors, please report here.
SECTIONS
TutorialsFind thousands of Bioinformatics and Life Science software tools and databases in the newly launched
Ads