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TRAP

TRAP

TRAP (the Tandem Repeats Analysis Program) is a tool to choose, classify, quantify, and automatic annotation of sequences repeated in tandem. The TRAP algorithm utilizes the results from the Tandem Repeats Finder to analyze the satellite content of DNA sequences.

Topic

Sequence composition, complexity and repeats; DNA polymorphism; Sequencing

Details

  • Operation: Repeat sequence detection
  • Software interface: Command-line user interface
  • Language: Perl
  • Operating system: Linux; Mac OS X
  • License: GNU GPL v3
  • Cost: Free
  • Version name: -
  • Maturity: Mature
  • Credit: CNPq/PIBIC
  • Contact: alan _at_ ime.usp.br | argruber _at_ usp.br | tiagosobreira _at_ yahoo.com.br
  • Collection: -

Publications

Sobreira TJ, Durham AM, Gruber A "TRAP: automated classification, quantification and annotation of tandemly repeated sequences." Bioinformatics 2006; 22(3):361-2 https://doi.org/10.1093/bioinformatics/bti809
PMID: 16332714


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