An updated version of matchclips for detecting copy number variation (CNV) breakpoints. The algorithm identified the breakpoint CIGAR strings of reads and their positions. The updated algorithm runs much faster than the original one.
Wu Y, Tian L, Pirastu M, Stambolian D, Li H "MATCHCLIP: locate precise breakpoints for copy number variation using CIGAR string by matching soft clipped reads." Front Genet. 2013 Aug 16;4:157. https://doi.org/10.3389/fgene.2013.00157
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