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atSNP Search

atSNP Search

atSNP Search is a web-based tool and database for analysis of human genome motifs with reference and variant alleles. The atSNP algorithm assesses and tests the variant alteration significance. atSNP also produces graphical representations of the motif matches. Currently, the database contains over 37 billion variant-motif pairs.

Topic

DNA polymorphism; Bioinformatics; Statistics and probability

Details

  • Operation: Statistical calculation
  • Software interface: Web user interface
  • Language: -
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Maturity: Stable
  • Credit: Center for Predictive Computational Phenotyping, University of Wisconsin - Madison, National Institutes of Health - Big Data to Knowledge (BD2K) Initiative
  • Contact: Sündüz Keleş keles _at_ stat.wisc.edu
  • Collection: -

Publications

Shin S, Hudson R, Harrison C, Craven M, Keles S "atSNP Search: a web resource for statistically evaluating influence of human genetic variation on transcription factor binding." Bioinformatics. 2019 Aug 1;35(15):2657-2659. https://doi.org/10.1093/bioinformatics/bty1010
PMID: 30534948
PMCID: PMC6662080


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