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GWAS4D
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GWAS4D

GWAS4D is a web-based tool for the analysis of genome-wide association study (GWAS) data. GWAS4D is an updated version GWAS3D and has algorithms for variant prioritization, incorporation of tissue-specific epigenetic data, transcriptional regulatory motifs, processing of Hi-C data, non-coding variant functional annotations, interactive visualization of SNP target interaction.



GWAS4D

GWAS4D is a web-based tool for the analysis of genome-wide association study (GWAS) data. GWAS4D is an updated version GWAS3D and has algorithms for variant prioritization, incorporation of tissue-specific epigenetic data, transcriptional regulatory motifs, processing of Hi-C data, non-coding variant functional annotations, interactive visualization of SNP target interaction.

Topic

GWAS study; Epigenomics; Molecular interactions, pathways and networks

Details

  • Operation: Variant calling; Genotyping; Transcriptional regulatory element prediction
  • Software interface: Web user interface
  • Language: Javascript;Perl
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
    • Cost: -
  • Version name: -
  • Credit: National Natural Science Foundation of China, Talent Excellence Program at Tianjin Medical University, Tianjin Medical University and the Thousand Youth Talents Plan of Tianjin, Discipline Development Fund at Tianjin Medical University.
  • Contact: mulin0424.li _at_ gmail.com
  • Collection: -

Publications

Huang D, Yi X, Zhang S, Zheng Z, Wang P, Xuan C, Sham PC, Wang J, Li MJ "GWAS4D: multidimensional analysis of context-specific regulatory variant for human complex diseases and traits." Nucleic Acids Res. 2018; 46(W1):W114-W120 https://doi.org/10.1093/nar/gky407
PMID: 29771388
PMCID: PMC6030885


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