MFPaQ (Mascot File Parsing and Quantification) is a tool to parse, validate, quantify Mascot results and isotopic labeling, SILAC/ICAT, and spectral counting, MS signal comparison. The MFPaQ algorithm has functions for retrieving the Mascot list of proteins, validation, sorting by scores, and by user-defined criteria.
Proteomics; Proteomics experiment
Bouyssié D, Gonzalez de Peredo A, Mouton E, Albigot R, Roussel L, Ortega N, Cayrol C, Burlet-Schiltz O, Girard JP, Monsarrat B "Mascot file parsing and quantification (MFPaQ), a new software to parse, validate, and quantify proteomics data generated by ICAT and SILAC mass spectrometric analyses: application to the proteomics study of membrane proteins from primary human endothelial cells." Mol. Cell Proteomics 2007; 6(9):1621-37 https://doi.org/10.1074/mcp.T600069-MCP200
PMID: 17533220
Bousquet-Dubouch MP, Nguen S, Bouyssié D, Burlet-Schiltz O, French SW, Monsarrat B, Bardag-Gorce F "Chronic ethanol feeding affects proteasome-interacting proteins." Proteomics, 2009 https://doi.org/10.1002/pmic.200800959
PMID: 19609968
PMCID: PMC2766596
Raymond AA, Gonzalez de Peredo A, Stella A, Ishida-Yamamoto A, Bouyssie D, Serre G, Monsarrat B, Simon M "Lamellar bodies of human epidermis: proteomics characterization by high throughput mass spectrometry and possible involvement of CLIP-170 in their trafficking/secretion." Mol Cell Proteomics, 2008 https://doi.org/10.1074/mcp.M700334-MCP200
PMID: 18622020
Roux-Dalvai F, Gonzalez de Peredo A, Simó C, Guerrier L, Bouyssié D, Zanella A, Citterio A, Burlet-Schiltz O, Boschetti E, Righetti PG, Monsarrat B "Extensive analysis of the cytoplasmic proteome of human erythrocytes using the peptide ligand library technology and advanced mass spectrometry." Mol Cell Proteomics, 2008 https://doi.org/10.1074/mcp.M800037-MCP200
PMID: 18614565
Stanislas T, Bouyssie D, Rossignol M, Vesa S, Fromentin J, Morel J, Pichereaux C, Monsarrat B, Simon-Plas F "Quantitative proteomics reveals a dynamic association of proteins to detergent-resistant membranes upon elicitor signaling in tobacco." Mol Cell Proteomics, 2009 https://doi.org/10.1074/mcp.M900090-MCP200
PMID: 19525550
PMCID: PMC2742443
Mouton-Barbosa E, Roux-Dalvai F, Bouyssié D, Berger F, Schmidt E, Righetti PG, Guerrier L, Boschetti E, Burlet-Schiltz O, Monsarrat B, Gonzalez de Peredo A "In-depth exploration of cerebrospinal fluid by combining peptide ligand library treatment and label-free protein quantification." Mol Cell Proteomics, 2010 https://doi.org/10.1074/mcp.M900513-MCP200
PMID: 20093276
PMCID: PMC2871408
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