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XTandem
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XTandem

X!Tandem is a tool to identify proteins in tandem mass spectra (MS/MS) data. The X!Tandem algorithm computes the statistical confidence for spectrum to sequence alignments and alignments to known protein sequences. The X!Tandem package has a graphical user interface (GUI) for visualization. See also 1. XTandem Parser, 2. rTANDEM, 3. shinyTANDEM.



XTandem

X!Tandem is a tool to identify proteins in tandem mass spectra (MS/MS) data. The X!Tandem algorithm computes the statistical confidence for spectrum to sequence alignments and alignments to known protein sequences. The X!Tandem package has a graphical user interface (GUI) for visualization. See also 1. XTandem Parser, 2. rTANDEM, 3. shinyTANDEM.

Topic

Proteomics; Proteomics experiment

Details

  • Operation: Protein identification; Blind peptide database search; PTM identification; Peptide identification; Peptide database search
  • Input: FASTA; dta; pkl; mzXML; mzData; MGF; X!Tandem XML; mzML
  • Output: XML
  • Software interface: Command-line user interface
  • Language: Java;C++
  • Operating system: Linux; Mac OS X
  • License: Artistic-1.0
    • Cost: Free
  • Version name: ALANINE
    • Maturity: Mature
  • Credit: The Ministerium fur Innovation, Wissenschaft, Forschung und Technologie des Landes Nordrhein-Westfalen, the Bundesministerium fur Bildung und Forschung.
  • Contact: contact _at_ thegpm.org
  • Collection: -

Publications

Muth T, Vaudel M, Barsnes H, Martens L, Sickmann A "XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results." Proteomics. 2010 Apr;10(7):1522-4. https://doi.org/10.1002/pmic.200900759
PMID: 20140905


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