DomainGraph is a plugin for Cytoscape to visualize molecular interaction networks. DomainGraph facilitates analysis of the effects of alternative splicing on genes, protein isoforms, molecular interactions, pathways, and miRNA binding sites. DomainGraph visualizes results produced by the AltAnalyze tool, including automatic annotation of affected genes, pathways, and miRNA binding sites. Requires: Cytoscape 2.6, and Java SE 8.
Gene transcripts; RNA splicing; Molecular interactions, pathways and networks; Functional, regulatory and non-coding RNA; Gene expression
Emig D, Salomonis N, Baumbach J, Lengauer T, Conklin BR, Albrecht M "AltAnalyze and DomainGraph: analyzing and visualizing exon expression data." Nucleic Acids Res. 2010 Jul;38(Web Server issue):W755-62. 10.1093/nar/gkq405. Epub 2010 May 31. https://doi.org/10.1093/nar/gkq405
PMID: 20513647
PMCID: PMC2896198
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