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SCANPY
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SCANPY

SCANPY is a Python library to analyze single-cell RNA-seq data. The SCANPY package has functions for preprocessing, clustering, differential expression testing, pseudo-time and trajectory inference, gene regulatory networks simulation, and visualization,



SCANPY

SCANPY is a Python library to analyze single-cell RNA-seq data. The SCANPY package has functions for preprocessing, clustering, differential expression testing, pseudo-time and trajectory inference, gene regulatory networks simulation, and visualization,

Topic

Gene expression; Cell biology; Genetics

Details

  • Operation: Differential gene expression analysis
  • Software interface: Library
  • Language: Python
  • Operating system: Linux; Mac OS X
  • License: BSD 3-Clause "New" or "Revised" License
    • Cost: Free
  • Version name: 1.4
  • Credit: The Helmholtz Postdoc Programme, Initiative and Networking Fund of the Helmholtz Association, the German Research Foundation (DFG).
  • Contact: Wolf FA alex.wolf _at_ helmholtz-muenchen.de
  • Collection: -

Publications

Wolf FA, Angerer P, Theis FJ "SCANPY: large-scale single-cell gene expression data analysis." Genome Biol. 2018 Feb 6;19(1):15. https://doi.org/10.1186/s13059-017-1382-0
PMID: 29409532
PMCID: PMC5802054


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