A tool to align RNA-seq data. The STAR algorithm uses suffix arrays, seed clustering, and stitching. It can detect non-canonical splice sites, chimeric sequences, and can also map full-length RNA sequences.
RNA-seq; Transcriptomics
Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S, Batut P, Chaisson M, Gingeras TR "STAR: ultrafast universal RNA-seq aligner." Bioinformatics. 2013 Jan 1;29(1):15-21. 2012 Oct 25. https://doi.org/10.1093/bioinformatics/bts635
PMID: 23104886
PMCID: PMC3530905
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