postprocess is an algorithm for the recovery of alternative splicing and library-specific expression data from de Bruijn graphs. The postprocess algorithm is for post-processing the Velvet assembler output. It reports the expression levels as reads per kilobase per million mapped reads (RPKM).
RNA-Seq; Sequence analysis
Sze SH, Tarone AM "A memory-efficient algorithm to obtain splicing graphs and de novo expression estimates from de Bruijn graphs of RNA-Seq data." BMC Genomics. 2014;15 Suppl 5:S6. 14. https://doi.org/10.1186/1471-2164-15-S5-S6
PMID: 25082000
PMCID: PMC4120145
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