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MPA Portable
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MPA Portable

MPA (MetaProteomeAnalyzer) Portable is a tool to identify and analyze proteins in metaproteomics and proteomics data. The MPA Portable supports MGF input files and X!Tandem, Comet, MS-GF+ database search engines. You can also run MPA Portable using the command-line interface MetaProteomeAnalyzerCLI.
See also MetaProteomeAnalyzer.



MPA Portable

MPA (MetaProteomeAnalyzer) Portable is a tool to identify and analyze proteins in metaproteomics and proteomics data. The MPA Portable supports MGF input files and X!Tandem, Comet, MS-GF+ database search engines. You can also run MPA Portable using the command-line interface MetaProteomeAnalyzerCLI.
See also MetaProteomeAnalyzer.

Topic

Proteomics; Proteomics experiment

Details

  • Operation: Peptide database search
  • Software interface: Graphical user interface, command-line user interface
  • Language: Java
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Apache License v2
    • Cost: Free
  • Version name: 3.4
  • Credit: Deutsche Forschungsgemeinschaft, NCI-ITCR, German Environmental Foundation(DBU), the Federal Ministry of Food, Agriculture, and Consumer Protection (BMELV), the Agency forRenewable Resources (FNR), Ghent University (Multidisciplinary Research Partnership“Bioinfor-matics: from nucleotides to networks”), the IWT SBO grant “INSPECTOR”, the EU FP7 PRIME-XS project.
  • Contact: rapp _at_ mpi-magdeburg.mpg.de
  • Collection: MetaProteomeAnalyzer

Publications

Muth T, Kohrs F, Heyer R, Benndorf D, Rapp E, Reichl U, Martens L, Renard BY "MPA Portable: A Stand-Alone Software Package for Analyzing Metaproteome Samples on the Go." Anal. Chem. 2018; 90(1):685-689 https://doi.org/10.1021/acs.analchem.7b03544
PMID: 29215871
PMCID: PMC5757220


Muth T, Behne A, Heyer R, Kohrs F, Benndorf D, Hoffmann M, Lehtevä M, Reichl U, Martens L, Rapp E "The MetaProteomeAnalyzer: a powerful open-source software suite for metaproteomics data analysis and interpretation." J. Proteome Res. 2015; 14(3):1557-65 https://doi.org/10.1021/pr501246w
PMID: 25660940


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