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SearchGUI
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SearchGUI

SearchGUI is a graphical user interface for X!Tandem, MS Amanda, MyriMatch, MS-GF+, Tide, Comet, OMSSA, Novor, Andromeda, and DirecTag proteomics identification search engines and de novo sequencing algorithms.



SearchGUI

SearchGUI is a graphical user interface for X!Tandem, MS Amanda, MyriMatch, MS-GF+, Tide, Comet, OMSSA, Novor, Andromeda, and DirecTag proteomics identification search engines and de novo sequencing algorithms.

Topic

Proteomics experiment; Proteomics; Data visualisation

Details

  • Operation: Protein identification; Mass spectrum visualisation; Blind peptide database search; Peptide identification; Peptide database search; Validation of peptide-spectrum matches; de Novo sequencing
  • Software interface: Graphical user interface
  • Language: Java
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Apache License v2
    • Cost: Free
  • Version name: 3.3.20
  • Credit: The Research Council of Norway, the Bergen Research Foundation, the Western Norway Regional Health Authority, the Meltzer foundation, the Ministerium fur Innovation, Wissenschaft, Forschung und Technologie des Landes Nordrhein-Westfalen, the Bundesministerium fur Bildung und Forschung.
  • Contact: marc.vaudel _at_ biomed.uib.no | harald.barsnes _at_ biomed.uib.no
  • Collection: -

Publications

Vaudel M, Barsnes H, Berven FS, Sickmann A, Martens L "SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches." Proteomics. 2011 Mar;11(5):996-9. https://doi.org/10.1002/pmic.201000595
PMID: 21337703


Barsnes H, Vaudel M "SearchGUI: A Highly Adaptable Common Interface for Proteomics Search and de Novo Engines." J Proteome Res, 2018 https://doi.org/10.1021/acs.jproteome.8b00175
PMID: 29774740


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